STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_04091RgpFc protein; COG3754 Lipopolysaccharide biosynthesis protein. (583 aa)    
Predicted Functional Partners:
SRA_04076
COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
   
 0.916
SRA_04081
Putative polysaccharide ABC transporter, ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
   
 0.916
SRA_04086
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.880
SRA_04071
Rhamnosyltransferase; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.874
SRA_04096
Hypothetical protein; COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
 
     0.847
SRA_04066
Putative RgpAc; Glycosyltransferase; COG0438 Glycosyltransferase.
 
  
 0.835
SRA_04106
Glycosyltransferase related enzyme; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.802
SRA_04101
Hypothetical protein.
       0.800
SRA_07826
Hypothetical protein; COG1522 Transcriptional regulators.
  
     0.758
SRA_09616
COG2367 Beta-lactamase class A.
  
     0.754
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.