STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_04236ATP--cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (193 aa)    
Predicted Functional Partners:
EutP
COG4917 Ethanolamine utilization protein; Belongs to the EutP/PduV family.
 
   
 0.859
SRA_04226
COG4810 Ethanolamine utilization protein.
 
   
 0.771
SRA_04246
COG4810 Ethanolamine utilization protein.
 
   
 0.618
SRA_04241
PduQ protein, putative; COG1454 Alcohol dehydrogenase, class IV.
  
  
 0.556
SRA_04296
Propanediol utilization protein PduL; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
 
  
 0.529
EutL
COG4816 Ethanolamine utilization protein.
  
  
 0.505
eutA
Reactivating factor for ethanolamine ammonia lyase; COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition.
     
 0.489
SRA_04256
COG3920 Signal transduction histidine kinase.
  
    0.460
SRA_04251
Response regulator receiver/ANTAR domain-containing protein; COG3707 Response regulator with putative antiterminator output domain.
       0.457
SRA_04321
Hypothetical protein.
 
     0.455
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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