STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_04376ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component. (235 aa)    
Predicted Functional Partners:
SRA_05621
Putative ABC transporter, permease protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.999
SRA_04381
ABC transporter, permease protein, putative; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 0.998
SRA_04371
Putative permease; COG0845 Membrane-fusion protein.
 
 
 0.958
SRA_06201
Putative ABC transporter, membrane protein subunit and ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
0.664
SRA_05306
Putative ABC transporter, permease protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.657
SRA_08801
Putative ABC transporter ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
  
    0.543
carB
COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); Belongs to the CarB family.
       0.474
SRA_05116
Putative ABC transporter, permease protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.455
tsaD
Putative DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
    0.454
SRA_05571
ABC transporter related protein; COG1131 ABC-type multidrug transport system, ATPase component.
 
  
0.443
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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