STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_04506COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (449 aa)    
Predicted Functional Partners:
GltB
COG0067 Glutamate synthase domain 1.
  
 0.999
gltD
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
  
 0.952
SRA_07131
COG0538 Isocitrate dehydrogenases.
   
 0.946
SRA_01297
Putative carbon-nitrogen hydrolase; COG0388 Predicted amidohydrolase.
   
 
 0.938
LpdA-2
COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
  
 
 0.927
GlnA
COG0174 Glutamine synthetase.
  
 
 0.924
argJ
Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
     
 0.913
SRA_00902
Aminotransferase AlaT; COG0436 Aspartate/tyrosine/aromatic aminotransferase.
  
 
 0.911
ArcC
COG0549 Carbamate kinase; Belongs to the carbamate kinase family.
     
 0.907
ArcC-2
COG0549 Carbamate kinase; Belongs to the carbamate kinase family.
     
 0.907
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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