STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_04611COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
SRA_03431
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.586
SRA_09236
Malolactic fermentation system transcription activator; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.582
SRA_04606
COG3759 Predicted membrane protein.
       0.527
SRA_04616
Hypothetical protein; COG0407 Uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.502
GltB
COG0067 Glutamate synthase domain 1.
  
  
 0.488
SRA_04621
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.435
SRA_04631
COG0765 ABC-type amino acid transport system, permease component.
       0.435
SRA_04626
COG0765 ABC-type amino acid transport system, permease component.
       0.411
SRA_04636
Putative amino acid ABC transporter, ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.
       0.402
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.