STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_05011Hypothetical protein. (536 aa)    
Predicted Functional Partners:
SRA_05016
Putative ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
 
     0.927
SRA_01217
COG3611 Replication initiation/membrane attachment protein.
  
     0.567
SRA_09616
COG2367 Beta-lactamase class A.
  
     0.567
SRA_01427
COG4640 Predicted membrane protein.
  
     0.560
SRA_04091
RgpFc protein; COG3754 Lipopolysaccharide biosynthesis protein.
  
     0.527
SRA_05021
Putative oxidoreductase, short-chain dehydrogenase/reductase; COG4221 Short-chain alcohol dehydrogenase of unknown specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.518
SRA_05026
COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases.
       0.506
SRA_07826
Hypothetical protein; COG1522 Transcriptional regulators.
  
     0.504
SRA_03141
Putative endolysin; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.491
SRA_09451
Hypothetical protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
     0.483
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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