STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CitECOG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family. (295 aa)    
Predicted Functional Partners:
CitF
COG3051 Citrate lyase, alpha subunit.
 
 
 0.997
citD
Citrate lyase subunit gamma; Covalent carrier of the coenzyme of citrate lyase.
 
 
 0.997
CitX
Putative apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase).
 
  
 0.994
CitC
Putative citrate lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
  
 0.956
citG
Putative 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; COG1767 Triphosphoribosyl-dephospho-CoA synthetase.
 
  
 0.924
araD
COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.870
SRA_05036
COG5016 Pyruvate/oxaloacetate carboxyltransferase.
  
  
 0.653
SRA_05066
Putative oxaloacetate decarboxylase, sodium ion pump subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).
  
  
 0.601
SRA_05061
Hypothetical protein.
       0.571
SRA_05071
COG0511 Biotin carboxyl carrier protein.
  
  
 0.535
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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