STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_05086COG1802 Transcriptional regulators. (233 aa)    
Predicted Functional Partners:
citG
Putative 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; COG1767 Triphosphoribosyl-dephospho-CoA synthetase.
 
     0.847
SRA_05081
Putative Mg2+/citrate transporter; COG2851 H+/citrate symporter.
 
     0.766
SRA_04931
COG4176 ABC-type proline/glycine betaine transport system, permease component.
 
   
 0.505
SRA_05066
Putative oxaloacetate decarboxylase, sodium ion pump subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).
 
     0.461
SRA_08776
Hypothetical protein; COG2610 H+/gluconate symporter and related permeases.
 
  
 0.461
SRA_09718
COG2828 Uncharacterized protein conserved in bacteria.
 
  
 0.461
SRA_05071
COG0511 Biotin carboxyl carrier protein.
 
     0.454
ilvH
COG0440 Acetolactate synthase, small (regulatory) subunit.
   
    0.406
CitE
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
     0.404
SRA_09713
Secondary transporter of divalent metal ions/citrate complexes; COG2851 H+/citrate symporter.
 
     0.402
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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