STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_05231COG4684 Predicted membrane protein. (190 aa)    
Predicted Functional Partners:
cbiO
Cobalt transporter ATP-binding subunit; COG1122 ABC-type cobalt transport system, ATPase component; overlaps another CDS with the same product name.
   
 
 0.957
cbiO-2
Cobalt transporter ATP-binding subunit; COG1122 ABC-type cobalt transport system, ATPase component; overlaps another CDS with the same product name.
   
 
 0.956
ecfT
Cobalt permease; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
 0.813
SRA_01267
COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.
   
 
 0.778
SRA_05221
Phosphopantothenate--cysteine ligase; COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase.
 
     0.699
CoaC
COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase.
 
     0.670
SRA_05236
Putative phosphoglucomutase; COG1109 Phosphomannomutase.
       0.588
SRA_08231
Hypothetical protein.
 
   
 0.543
rexB
ATP-dependent nuclease subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily.
  
     0.466
SRA_05776
Permease.
  
     0.464
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.