STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_05326Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators. (152 aa)    
Predicted Functional Partners:
SRA_05316
Putative choline ABC transporter, osmoprotectant binding protein; COG1174 ABC-type proline/glycine betaine transport systems, permease component.
  
  
 0.860
SRA_05321
Putative ABC transporter, ATP-binding protein, choline transporter; COG1125 ABC-type proline/glycine betaine transport systems, ATPase components.
  
    0.808
SRA_05331
Haloacid dehalogenase-like hydrolase; COG0561 Predicted hydrolases of the HAD superfamily.
  
    0.439
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.