STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_06231COG2249 Putative NADPH-quinone reductase (modulator of drug activity B). (188 aa)    
Predicted Functional Partners:
SRA_03946
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
 
 
  0.925
SRA_02956
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
 
 
  0.919
SRA_06226
COG1309 Transcriptional regulator.
 
     0.872
SRA_02151
COG0019 Diaminopimelate decarboxylase.
    
  0.871
SRA_06216
Putative oleoyl-acyl carrier protein thioesterase; COG3884 Acyl-ACP thioesterase.
       0.532
SRA_06221
Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.532
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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