STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_06301COG1215 Glycosyltransferases, probably involved in cell wall biogenesis. (436 aa)    
Predicted Functional Partners:
SRA_02271
Glucan-binding protein C.
  
 
 0.982
SRA_06296
Putative endoglucanase precursor; COG3405 Endoglucanase Y; Belongs to the glycosyl hydrolase 8 (cellulase D) family.
 
  
 0.963
SRA_06311
Hypothetical protein.
 
     0.882
SRA_04831
Putative deacetylase; COG0726 Predicted xylanase/chitin deacetylase.
 
  
 0.778
SRA_06291
COG0488 ATPase components of ABC transporters with duplicated ATPase domains.
  
   0.536
SRA_04191
Cell surface protein precursor.
 
   
 0.524
SRA_06316
COG0381 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
     
 0.513
DltB
Hypothetical protein; Could be involved in the transport of activated D-alanine through the membrane.
 
 
 0.503
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.503
SRA_06001
Peptidoglycan binding domain-containing protein; COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
  
 0.466
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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