STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_06391Putative membrane protein; Permease; COG0628 Predicted permease. (390 aa)    
Predicted Functional Partners:
SRA_06386
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
       0.800
SRA_06396
7,8-dihydro-8-oxoguanine-triphosphatase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
       0.638
BudA
COG3527 Alpha-acetolactate decarboxylase.
       0.539
AlsS
Acetolactate synthase; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.
  
    0.521
SRA_06401
COG2706 3-carboxymuconate cyclase.
       0.453
SRA_06406
Xylose isomerase domain-containing protein; COG1082 Sugar phosphate isomerases/epimerases.
  
    0.439
SRA_06411
Hypothetical protein.
       0.421
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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