STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_06406Xylose isomerase domain-containing protein; COG1082 Sugar phosphate isomerases/epimerases. (271 aa)    
Predicted Functional Partners:
SRA_06401
COG2706 3-carboxymuconate cyclase.
       0.783
SRA_04151
Hypothetical protein; COG0438 Glycosyltransferase.
  
     0.603
SRA_06411
Hypothetical protein.
       0.597
SRA_07626
COG4703 Uncharacterized protein conserved in bacteria.
  
     0.595
SRA_07461
Hypothetical protein.
  
     0.591
SRA_06396
7,8-dihydro-8-oxoguanine-triphosphatase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
  
    0.570
SRA_07091
Putative oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
 
  
 0.549
SRA_02971
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
  
  
 0.485
SRA_06391
Putative membrane protein; Permease; COG0628 Predicted permease.
  
    0.439
SRA_06386
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
       0.435
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.