STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_06441Putative oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating). (360 aa)    
Predicted Functional Partners:
SRA_08726
Hypothetical protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
  
 
 0.877
SRA_05416
NADH oxidase (H2O-forming); COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
  
 
 0.815
SRA_06456
DNA replication protein DnaD; COG3935 Putative primosome component and related proteins.
 
     0.722
SRA_06446
Hypothetical protein.
       0.650
SRA_06451
Hypothetical protein; COG2384 Predicted SAM-dependent methyltransferase.
       0.650
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.650
SRA_06431
COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes.
  
  
 0.641
RfbA
Putative glucose-1-phosphate thymidyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
       0.640
SRA_02266
rRNA methylase (SAM-dependent methyltransferase superfamily), putative; COG0500 SAM-dependent methyltransferases.
  
  
 0.605
SRA_04396
COG1837 Predicted RNA-binding protein (contains KH domain); Belongs to the UPF0109 family.
  
     0.557
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.