STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_06511COG1396 Predicted transcriptional regulators. (286 aa)    
Predicted Functional Partners:
SRA_01577
Peptidase; COG3212 Predicted membrane protein.
  
     0.578
SRA_06506
Hypothetical protein.
       0.559
SRA_01267
COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.
  
    0.537
SRA_01272
Putative cobalt ABC transporter, ATP-binding protein; COG1122 ABC-type cobalt transport system, ATPase component.
  
     0.527
SRA_08871
Hypothetical protein; COG3568 Metal-dependent hydrolase.
  
     0.500
SRA_01287
Hypothetical protein.
  
     0.458
SRA_08736
COG1937 Uncharacterized protein conserved in bacteria.
   
    0.457
SRA_04151
Hypothetical protein; COG0438 Glycosyltransferase.
  
     0.448
SRA_06516
Permease (efflux protein); COG0477 Permeases of the major facilitator superfamily.
 
   
 0.420
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.418
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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