STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_07431Putative 40K cell wall protein precursor. (606 aa)    
Predicted Functional Partners:
SRA_00538
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
     
  0.900
SRA_00603
Penicillin-binding protein 1a; Membrane carboxypeptidase; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
     
  0.900
SRA_01417
COG0744 Membrane carboxypeptidase (penicillin-binding protein).
     
  0.900
SRA_01597
COG0744 Membrane carboxypeptidase (penicillin-binding protein).
     
  0.900
SRA_07486
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
     
  0.900
SRA_09698
COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
  0.900
SRA_04751
Hypothetical protein.
  
     0.572
SRA_06401
COG2706 3-carboxymuconate cyclase.
  
     0.446
cshA
ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
       0.445
SRA_03201
Na+/solute symporter.
  
     0.429
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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