STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_07541COG1307 Uncharacterized protein conserved in bacteria. (279 aa)    
Predicted Functional Partners:
SRA_09903
Hypothetical protein; COG1461 Predicted kinase related to dihydroxyacetone kinase.
 
 0.986
SRA_07531
COG4698 Uncharacterized protein conserved in bacteria.
  
  
 0.819
SRA_07536
Hypothetical protein; COG2755 Lysophospholipase L1 and related esterases.
  
  
 0.810
SRA_07526
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
     
 0.615
SRA_09908
Putative alkaline-shock protein; COG1302 Uncharacterized protein conserved in bacteria.
 
    0.611
RecN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
       0.490
rex
Redox-sensing transcriptional repressor Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
  
   
 0.475
argR
Putative arginine repressor; Regulates arginine biosynthesis genes.
       0.474
SRA_07556
Putative hemolysin; COG1189 Predicted rRNA methylase.
       0.474
SRA_07561
Putative farnesyl diphosphate synthase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.474
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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