STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_07841RNA-directed RNA polymerase; COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1. (171 aa)    
Predicted Functional Partners:
cmk
COG0283 Cytidylate kinase.
 
      0.684
SRA_07851
COG1296 Predicted branched-chain amino acid permease (azaleucine resistance).
       0.602
SRA_07846
COG4392 Predicted membrane protein.
       0.600
SRA_09341
Recombination factor protein RarA; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase.
      0.509
SRA_07836
COG1085 Galactose-1-phosphate uridylyltransferase.
       0.501
SRA_07861
COG0036 Pentose-5-phosphate-3-epimerase.
  
    0.429
RpiB
COG0698 Ribose 5-phosphate isomerase RpiB.
       0.421
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.