STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_07876AP endonuclease; COG4952 Predicted sugar isomerase. (310 aa)    
Predicted Functional Partners:
SRA_07871
PTS system, beta-glucoside-specific IIABC component; COG1264 Phosphotransferase system IIB components.
 
    0.788
SRA_07866
COG1349 Transcriptional regulators of sugar metabolism.
 
  
 0.684
SRA_02971
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
  
  
 0.485
SRA_07091
Putative oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
  
  
 0.485
RpiB
COG0698 Ribose 5-phosphate isomerase RpiB.
     
 0.445
SRA_07861
COG0036 Pentose-5-phosphate-3-epimerase.
       0.418
SRA_07846
COG4392 Predicted membrane protein.
 
     0.415
tsaD
Putative DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.414
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.