STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_07976COG3345 Alpha-galactosidase. (720 aa)    
Predicted Functional Partners:
SRA_00987
Hypothetical protein; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.926
SRA_00977
Sucrose-6-phosphate hydrolase (sucrase, invertase); Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.924
SRA_07971
Sugar ABC transporter, sugar-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
  
 0.907
SRA_07961
COG0395 ABC-type sugar transport system, permease component.
 
  
 0.867
SRA_07966
COG1175 ABC-type sugar transport systems, permease components.
 
  
 0.839
GtfA
Sucrose phosphorylase, GtfA; COG0366 Glycosidases.
 
  
 0.795
SRA_07981
Putative MSM operon regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins.
 
   
 0.774
galT
COG4468 Galactose-1-phosphate uridyltransferase.
 
  
 0.642
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.581
SRA_07946
Dextran glucosidase DexB; COG0366 Glycosidases.
  
  
 0.435
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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