STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_07981Putative MSM operon regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins. (277 aa)    
Predicted Functional Partners:
SRA_07976
COG3345 Alpha-galactosidase.
 
   
 0.774
SRA_07971
Sugar ABC transporter, sugar-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
   
 0.752
SRA_07961
COG0395 ABC-type sugar transport system, permease component.
 
  
 0.672
SRA_07966
COG1175 ABC-type sugar transport systems, permease components.
 
  
 0.669
GtfA
Sucrose phosphorylase, GtfA; COG0366 Glycosidases.
 
   
 0.569
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.560
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.