STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srlECOG3732 Phosphotransferase system sorbitol-specific component IIBC. (334 aa)    
Predicted Functional Partners:
SRA_08316
Putative PTS system, sorbitol-specific enzyme IIA; COG3731 Phosphotransferase system sorbitol-specific component IIA.
 
 
 0.998
srlA
PTS system, sorbitol (glucitol) phosphotransferase enzyme IIC2; COG3730 Phosphotransferase system sorbitol-specific component IIC.
 
 
 0.997
SRA_08341
Sorbitol-6-phosphate 2-dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
  0.978
SRA_07116
Phosphocarrier protein HPr; COG1925 Phosphotransferase system, HPr-related proteins.
    
 0.904
SRA_08331
COG4578 Glucitol operon activator.
 
  
 0.881
SRA_08336
Regulator of sorbitol operon; COG3711 Transcriptional antiterminator.
 
    0.804
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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