STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_08336Regulator of sorbitol operon; COG3711 Transcriptional antiterminator. (621 aa)    
Predicted Functional Partners:
SRA_08331
COG4578 Glucitol operon activator.
 
    0.960
SRA_08341
Sorbitol-6-phosphate 2-dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   0.948
srlA
PTS system, sorbitol (glucitol) phosphotransferase enzyme IIC2; COG3730 Phosphotransferase system sorbitol-specific component IIC.
 
  
 0.874
SRA_08316
Putative PTS system, sorbitol-specific enzyme IIA; COG3731 Phosphotransferase system sorbitol-specific component IIA.
 
    0.810
srlE
COG3732 Phosphotransferase system sorbitol-specific component IIBC.
 
    0.804
SRA_05721
COG2213 Phosphotransferase system, mannitol-specific IIBC component.
 
  
 0.739
SRA_07871
PTS system, beta-glucoside-specific IIABC component; COG1264 Phosphotransferase system IIB components.
 
 
 0.725
TreB
Putative PTS system, trehalose-specific IIABC component; COG1264 Phosphotransferase system IIB components.
 
 
 0.718
SRA_06561
PTS system, lactose-specific enzyme IIBC EIIBC-LAC; COG1455 Phosphotransferase system cellobiose-specific component IIC.
 
  
 0.680
SRA_00972
Putative PTS system, sucrose-specific IIABC component; COG1264 Phosphotransferase system IIB components.
  
 
 0.675
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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