STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_08666Putative transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. (318 aa)    
Predicted Functional Partners:
SRA_00683
COG4585 Signal transduction histidine kinase.
 
 
 0.700
SRA_06896
COG4585 Signal transduction histidine kinase.
 
 
 0.645
SRA_01477
COG4585 Signal transduction histidine kinase.
 
 
 0.599
aguA
COG2957 Peptidylarginine deiminase and related enzymes.
 
   
 0.572
ptcA
Putrescine carbamoyltransferase; Catalyzes the phosphorolysis of N-carbamoylputrescine to form carbamoyl phosphate and putrescine. Is involved in the degradation pathway of the polyamine agmatine.
     
 0.555
SRA_08656
COG0531 Amino acid transporters.
 
   
 0.500
SRA_06921
Hypothetical protein; COG4109 Predicted transcriptional regulator containing CBS domains.
  
     0.427
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.