STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_09121Transaminase; COG0436 Aspartate/tyrosine/aromatic aminotransferase. (372 aa)    
Predicted Functional Partners:
ArcD
Arginine/ornithine antiporter; COG0531 Amino acid transporters.
 
  
 0.730
SRA_09156
Hypothetical protein.
  
     0.552
GltB
COG0067 Glutamate synthase domain 1.
  
  
 0.514
arcA
COG2235 Arginine deiminase.
 
   
 0.485
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
  
    0.456
SRA_04436
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
  
  
 0.446
argR-2
Putative transcriptional regulator of arginine metabolism; Regulates arginine biosynthesis genes.
     
 0.445
SRA_02481
COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.432
SRA_09111
COG4550 Predicted membrane protein; Belongs to the UPF0342 family.
       0.429
ArcC-2
COG0549 Carbamate kinase; Belongs to the carbamate kinase family.
     
 0.424
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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