STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_09693Putative oligopeptide ABC transporter, substrate-binding protein OppA; COG4166 ABC-type oligopeptide transport system, periplasmic component. (549 aa)    
Predicted Functional Partners:
SRA_09678
Putative oligopeptide ABC transporter, ATP-binding protein OppD; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.994
SRA_09683
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.994
SRA_09688
Putative oligopeptide transport system, permease protein OppB; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.994
SRA_09673
Putative oligopeptide ABC transporter, ATP-binding protein OppF; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.992
SRA_09668
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
       0.518
SRA_09698
COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.485
SRA_03986
Putative glutamine ABC transporter, permease protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
 
 0.483
SRA_09848
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
 
 0.483
potA
Spermidine/putrescine import ATP-binding protein potA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
   
 
 0.430
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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