STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_09958COG4475 Uncharacterized protein conserved in bacteria; Belongs to the UPF0340 family. (187 aa)    
Predicted Functional Partners:
SRA_09963
COG4720 Predicted membrane protein.
 
    0.929
RpiB
COG0698 Ribose 5-phosphate isomerase RpiB.
 
  
 0.825
SRA_09968
COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
       0.800
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.800
prmC
Putative protoporphyrinogen oxidase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
      0.685
lacB
Galactose-6-phosphate isomerase subunit LacB; COG0698 Ribose 5-phosphate isomerase RpiB.
 
  
 0.571
lacA
Galactose-6-phosphate isomerase subunit LacA; COG0698 Ribose 5-phosphate isomerase RpiB.
  
  
 0.457
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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