STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000405945_00555Unannotated protein. (163 aa)    
Predicted Functional Partners:
GCA_000405945_00556
Unannotated protein.
    
 0.849
GCA_000405945_00551
Unannotated protein.
     
 0.791
GCA_000405945_00552
Unannotated protein.
       0.785
GCA_000405945_00557
Unannotated protein.
     
 0.780
GCA_000405945_00550
Unannotated protein.
       0.773
GCA_000405945_00553
Unannotated protein.
       0.773
GCA_000405945_00554
Unannotated protein.
       0.773
GCA_000405945_00547
Unannotated protein.
       0.714
GCA_000405945_00548
Unannotated protein.
       0.714
GCA_000405945_00549
Unannotated protein.
       0.714
Your Current Organism:
Omnitrophus fodinae
NCBI taxonomy Id: 699264
Other names: C. Omnitrophus fodinae SCGC AAA011-A17, Candidatus Omnitrophus fodinae SCGC AAA011-A17, Omnitrophica bacterium SCGC AAA011-A17, candidate division OP3 bacterium SCGC AAA011-A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.