STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000405945_01423Unannotated protein. (239 aa)    
Predicted Functional Partners:
GCA_000405945_01422
Unannotated protein.
 
     0.892
GCA_000405945_01421
Unannotated protein.
 
     0.847
GCA_000405945_00501
Unannotated protein.
  
  
  0.796
GCA_000405945_01419
Unannotated protein.
 
     0.779
GCA_000405945_01420
Unannotated protein.
 
     0.713
GCA_000405945_00395
Unannotated protein.
  
     0.708
GCA_000405945_01424
Unannotated protein.
 
     0.695
GCA_000405945_01418
Unannotated protein.
 
     0.688
GCA_000405945_00224
Unannotated protein.
  
     0.586
GCA_000405945_01189
Unannotated protein.
  
     0.516
Your Current Organism:
Omnitrophus fodinae
NCBI taxonomy Id: 699264
Other names: C. Omnitrophus fodinae SCGC AAA011-A17, Candidatus Omnitrophus fodinae SCGC AAA011-A17, Omnitrophica bacterium SCGC AAA011-A17, candidate division OP3 bacterium SCGC AAA011-A17
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.