STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000405945_01642Unannotated protein. (145 aa)    
Predicted Functional Partners:
GCA_000405945_01643
Unannotated protein.
       0.550
GCA_000405945_00137
Unannotated protein.
     
 0.507
GCA_000405945_00201
Unannotated protein.
   
   0.502
GCA_000405945_00099
Unannotated protein.
   
   0.492
GCA_000405945_00957
Unannotated protein.
  
 
   0.490
GCA_000405945_00347
Unannotated protein.
   
 
 0.479
GCA_000405945_00687
Unannotated protein.
  
  
 0.474
GCA_000405945_01154
Unannotated protein.
  
 
 
 0.466
GCA_000405945_01560
Unannotated protein.
   
 
 0.447
GCA_000405945_00162
Unannotated protein.
   
 
 0.434
Your Current Organism:
Omnitrophus fodinae
NCBI taxonomy Id: 699264
Other names: C. Omnitrophus fodinae SCGC AAA011-A17, Candidatus Omnitrophus fodinae SCGC AAA011-A17, Omnitrophica bacterium SCGC AAA011-A17, candidate division OP3 bacterium SCGC AAA011-A17
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