STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPN30216.1Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (276 aa)    
Predicted Functional Partners:
nuoCD_1
NADH-quinone oxidoreductase subunit C/D.
   
 
 0.892
nuoCD_2
NADH-quinone oxidoreductase subunit C/D.
   
 
 0.892
nfi
Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.
       0.700
KPN30981.1
NADH dehydrogenase subunit I.
    
 0.626
KPN30214.1
Intramembrane serine protease GlpG.
       0.610
fer1_3
Ferredoxin-1.
  
  0.546
KPN31421.1
acyl-CoA thioesterase YbgC.
   
 0.545
KPN29511.1
Peptidyl-prolyl cis-trans isomerase B (rotamase B).
   
 
 0.541
KPN30985.1
NADH dehydrogenase subunit A.
    
 
 0.501
gap
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.493
Your Current Organism:
Halolamina pelagica
NCBI taxonomy Id: 699431
Other names: CGMCC 1.10329, H. pelagica, Halobacteriaceae archaeon TBN21, Halobacteriaceae archaeon TBN49, Halolamina pelagica Cui et al. 2011, JCM 16809, strain TBN21
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