STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPN31692.1DNA-binding transcriptional regulator CpxR. (217 aa)    
Predicted Functional Partners:
bat_12
Bacterioopsin transcriptional activator.
 
 
 0.946
KPN28990.1
Bacterio-opsin activator.
 
 
 0.943
KPN29200.1
cyclic-di-GMP phosphodiesterase.
 
 
 0.939
KPN30781.1
Sensory histidine kinase AtoS.
 
 0.778
KPN28989.1
Sensory histidine kinase AtoS.
  
 
 0.759
bat_8
Bacterioopsin transcriptional activator.
  
 
  0.688
KPN29728.1
Sensory histidine kinase AtoS.
  
 
  0.677
KPN30887.1
Sensory histidine kinase AtoS.
  
 
  0.670
KPN29198.1
Sensory histidine kinase AtoS.
  
  
  0.662
KPN29215.1
Sensory histidine kinase AtoS; Overlaps another CDS with the same product name.
  
  
  0.653
Your Current Organism:
Halolamina pelagica
NCBI taxonomy Id: 699431
Other names: CGMCC 1.10329, H. pelagica, Halobacteriaceae archaeon TBN21, Halobacteriaceae archaeon TBN49, Halolamina pelagica Cui et al. 2011, JCM 16809, strain TBN21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.