STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD97230.1Poly(3-hydroxybutyrate) depolymerase. (487 aa)    
Predicted Functional Partners:
SDD69390.1
Polyhydroxyalkanoate synthase.
 
  
 0.931
SDE82884.1
Polyhydroxyalkanoate synthase.
 
  
 0.838
SDE82862.1
Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.790
SDD76992.1
acetoacetyl-CoA reductase.
  
   
 0.647
SDE27255.1
3-hydroxybutyrate dehydrogenase.
  
   
 0.550
SDE81732.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.489
SDE62215.1
Phasin family protein.
  
   
 0.443
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.443
SDD97260.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.419
SDD97295.1
TRAP transporter, DctM subunit.
       0.419
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.