STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE05633.1General L-amino acid transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (340 aa)    
Predicted Functional Partners:
SDE05574.1
General L-amino acid transport system permease protein.
 
 0.998
SDE05602.1
General L-amino acid transport system permease protein.
 
 
 0.997
SDE05544.1
General L-amino acid transport system ATP-binding protein.
 
 0.978
SDE05658.1
General L-amino acid transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
  
 
0.954
SDE81010.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.837
SDF02443.1
Two-component response regulator, FixJ family, consists of REC and HTH domains.
   
 0.818
SDE78802.1
Two-component system, OmpR family, response regulator QseB/two-component system, cell cycle response regulator CpdR.
   
 0.812
SDE47433.1
PAS domain S-box-containing protein.
   
 0.803
SDE83149.1
PAS domain S-box-containing protein.
   
 0.803
SDE82758.1
PAS fold-containing protein.
    
 0.779
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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