STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE10865.1Helix-turn-helix. (157 aa)    
Predicted Functional Partners:
SDE30306.1
DNA polymerase III, delta subunit.
  
     0.732
SDE62097.1
Hypothetical protein.
  
     0.726
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.725
SDE36964.1
Protein of unknown function.
  
     0.722
SDE11875.1
N-terminal double-transmembrane domain-containing protein.
  
     0.675
SDE92325.1
Uncharacterized membrane protein.
  
     0.635
SDE46987.1
Hypothetical protein.
 
     0.612
SDD69008.1
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex.
  
     0.601
SDE55245.1
TIGR02302 family protein.
  
     0.570
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.551
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.