STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE06784.11-hydroxycarotenoid 3,4-desaturase. (521 aa)    
Predicted Functional Partners:
SDE06810.1
Carotenoid 1,2-hydratase.
 
 
 0.986
SDE17717.1
Phytoene synthase.
 
 0.957
SDD77517.1
Phytoene synthase.
 
 
 0.943
SDE06731.1
Demethylspheroidene O-methyltransferase.
 
 
 0.906
SDE06705.1
3-hydroxyethyl bacteriochlorophyllide a dehydrogenase.
 
  
 0.878
SDE06642.1
Chlorophyllide a reductase subunit Z.
 
  
 0.870
SDD77549.1
Hopene-associated glycosyltransferase HpnB.
  
 
 0.869
SDE56941.1
Phytoene synthase.
  
 
 0.864
SDE07115.1
3-vinyl bacteriochlorophyllide hydratase.
  
  
 0.860
SDE17630.1
Magnesium chelatase subunit D; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
 
 0.825
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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