STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE30144.1Hypothetical protein. (145 aa)    
Predicted Functional Partners:
SDE30114.1
Hypothetical protein.
 
     0.932
SDE41995.1
Hypothetical protein.
  
     0.774
SDE18586.1
Outer membrane protein OmpU.
  
     0.773
SDE27337.1
Hypothetical protein.
  
     0.773
SDE18559.1
Outer membrane protein OmpU.
  
     0.771
SDE30178.1
Pyridoxamine 5'-phosphate oxidase.
       0.768
SDD91945.1
Hypothetical protein.
  
     0.767
SDE10555.1
Hypothetical protein.
  
     0.763
SDE82537.1
FliJ protein.
  
     0.760
SDE55678.1
Rod shape-determining protein MreD.
  
     0.758
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.