STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE25625.1Phage portal protein, lambda family. (486 aa)    
Predicted Functional Partners:
SDE25735.1
Predicted phage recombinase, RecA/RadA family.
 
    0.912
SDE25683.1
Mu-like prophage major head subunit gpT.
 
    0.893
SDE93218.1
Phage terminase, large subunit GpA.
 
  
 0.879
SDE93187.1
Hypothetical protein.
 
     0.800
SDE25597.1
MerR HTH family regulatory protein.
       0.773
SDE45843.1
Phage tail tape measure protein, TP901 family, core region.
 
   
 0.724
SDF05066.1
Phage tail protein, P2 protein I family.
 
  
 0.716
SDF05034.1
Baseplate J-like protein.
 
   
 0.695
SDE45684.1
Phage tail-collar fibre protein.
 
    0.694
SDE45890.1
Hypothetical protein.
 
   
 0.652
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.