STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE49945.1FGGY family of carbohydrate kinases, N-terminal domain. (112 aa)    
Predicted Functional Partners:
SDE49970.1
Glycerol kinase.
     0.960
SDE68992.1
Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif.
   
 0.952
SDF07416.1
Integrative and conjugative element protein, VC0181 family.
   
 0.952
SDE61842.1
Glycerophosphoryl diester phosphodiesterase.
  
  
 0.772
SDE49859.1
Circadian clock protein KaiC.
       0.682
SDE49882.1
Circadian clock protein KaiB.
       0.682
SDE49912.1
PAS domain S-box-containing protein.
       0.682
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  0.638
SDD78221.1
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.578
SDE08949.1
Serine protease Do; Belongs to the peptidase S1C family.
   
 0.571
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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