STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE48085.1Nucleotide-binding universal stress protein, UspA family. (137 aa)    
Predicted Functional Partners:
SDD94802.1
Spermidine/putrescine transport system substrate-binding protein.
  
    0.596
SDE08477.1
YrhK-like protein.
  
     0.577
SDE48055.1
Uncharacterized conserved protein, DUF2267 family.
       0.566
SDE26907.1
DnaK suppressor protein.
 
  
 0.526
SDE18022.1
Biopolymer transport protein ExbD.
  
     0.499
SDD94724.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.493
SDD78478.1
Nucleotide-binding universal stress protein, UspA family.
  
    0.486
SDE54407.1
Hypothetical protein.
   
    0.441
SDE51417.1
Biopolymer transport protein ExbD.
  
     0.440
SDE95898.1
Anaerobic selenocysteine-containing dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
  
 0.433
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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