STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE74146.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (837 aa)    
Predicted Functional Partners:
SDE78680.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 0.994
SDE78802.1
Two-component system, OmpR family, response regulator QseB/two-component system, cell cycle response regulator CpdR.
  
 0.991
SDE47433.1
PAS domain S-box-containing protein.
 
0.987
SDD65353.1
PAS domain S-box-containing protein.
 
 0.986
SDE83149.1
PAS domain S-box-containing protein.
 
 0.985
SDE27668.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.984
SDE21210.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.982
SDE85202.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.982
SDF02443.1
Two-component response regulator, FixJ family, consists of REC and HTH domains.
 
 0.980
SDD82833.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.975
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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