STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE83635.1Type VI secretion system protein ImpD. (525 aa)    
Predicted Functional Partners:
SDE83584.1
Type VI secretion system protein ImpB.
 0.999
SDE83366.1
Type VI secretion system protein ImpK.
 
  
 0.994
SDE38396.1
Type VI secretion system secreted protein Hcp.
 
 0.987
SDE83501.1
Type VI secretion system secreted protein Hcp.
 
 0.987
SDE83730.1
Type VI secretion system protein ImpH.
 
 
 0.973
SDE83703.1
Type VI secretion system protein ImpG.
 
  
 0.970
SDE83658.1
Type VI secretion system protein ImpE.
 
    0.968
SDE83677.1
Type VI secretion system protein ImpF.
 
  
 0.962
SDE83546.1
Type VI secretion system protein ImpA.
 
 
 0.948
SDE83519.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 0.933
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.