STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE83476.1Type VI secretion system secreted protein VgrG. (643 aa)    
Predicted Functional Partners:
SDE83501.1
Type VI secretion system secreted protein Hcp.
 
  
 0.975
SDE83366.1
Type VI secretion system protein ImpK.
 
  
 0.967
SDE83730.1
Type VI secretion system protein ImpH.
 
 
 0.965
SDE83584.1
Type VI secretion system protein ImpB.
 
  
 0.962
SDE83430.1
Type VI secretion system protein.
 
  
 0.954
SDE38396.1
Type VI secretion system secreted protein Hcp.
 
  
 0.947
SDE83453.1
Hypothetical protein.
 
     0.942
SDE83409.1
Type VI secretion system protein VasD.
 
  
 0.935
SDE83393.1
Type VI secretion system protein ImpJ.
  
 0.925
SDE83341.1
Type VI secretion system protein ImpL.
 
  
 0.916
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.