STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE87157.1DNA-binding transcriptional regulator, IclR family. (261 aa)    
Predicted Functional Partners:
SDF01823.1
Urea carboxylase.
  
 
  0.977
SDE87264.1
Acetyl-CoA acetyltransferase.
 
 
 0.863
SDE05384.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.817
SDE37306.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.817
SDE87129.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
    0.811
SDE87239.1
Hypothetical protein.
 
     0.811
SDE87314.1
Acyl dehydratase.
 
 
  0.713
SDE87377.1
Hypothetical protein.
 
     0.704
SDE87286.1
Acyl-CoA synthetase (NDP forming).
 
 
  0.639
SDE87180.1
acyl-CoA dehydrogenase.
    
  0.615
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.