STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF00984.1Type IV secretion system protein VirB4. (230 aa)    
Predicted Functional Partners:
SDF00716.1
Type IV secretion system protein VirB10.
 
 
 0.996
SDF00751.1
Type IV secretion system protein VirB9.
 
 
 0.996
SDF00899.1
P-type conjugative transfer protein TrbJ.
  
 0.993
SDF00871.1
Type IV secretion system protein TrbL.
 
  
 0.970
SDF00780.1
Type IV secretion system protein VirB5.
 
  
 0.969
SDE56804.1
Pilus assembly protein CpaF.
    
 0.882
SDF01103.1
Type IV secretion system protein VirD4.
 
  
 0.815
SDF06411.1
Conjugative transfer signal peptidase TraF.
 
   
 0.808
SDF07597.1
Conjugative transfer signal peptidase TraF.
 
   
 0.808
SDF07663.1
Type IV secretory pathway, VirD2 components (relaxase).
 
   
 0.799
Your Current Organism:
Rhodospira trueperi
NCBI taxonomy Id: 69960
Other names: ATCC 700224, R. trueperi, strain 8316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.