STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDX16100.1ATPase domain-containing protein. (467 aa)    
Predicted Functional Partners:
CDX16080.1
Two-component system response regulator.
 
 0.981
uhpA
DNA-binding response regulator in two-component regulatory system wtih UhpB; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.910
CDX34579.1
Two component transcriptional regulator, LuxR family.
 
 0.910
CDX32417.1
Two component transcriptional regulator, LuxR family.
 
 0.909
sgaR
Putative transcriptional regulatory protein SgaR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.890
CDX37878.1
GAF sensor hybrid histidine kinase.
  
 0.879
CDX37875.1
Putative sensor/response regulator hybrid protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.869
CDX43208.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 0.869
agmR
Glycerol metabolism activator.
 
 0.863
CDX42975.1
Respose regulatory protein.
 
 0.849
Your Current Organism:
Mesorhizobium plurifarium
NCBI taxonomy Id: 69974
Other names: CIP 105884, JCM 21566, LMG 11892, LMG:11892, M. plurifarium, Mesorhizobium sp. LMG 11892, NBRC 102498, Rhizobium sp. LMG 7836, Rhizobium sp. LMG 7854
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