STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB06434.1alpha-L-rhamnosidase; InterPro IPR013737:IPR008902; KEGG: scb:SCAB_22771 putative rhamnosidase; PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575092; PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain. (747 aa)    
Predicted Functional Partners:
AEB06436.1
Beta-glucuronidase; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR006101; KEGG: pjd:Pjdr2_4080 beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; PRIAM: Beta-glucuronidase; SPTR: Putative uncharacterized protein; IMG reference gene:2503575094; PFAM: Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain.
 
 0.824
AEB06432.1
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: csc:Csac_0600 xylose isomerase domain-containing protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Putative sugar phosphate isomerasesiderophore/epimerase; IMG reference gene:2503575090; PFAM: Xylose isomerase-like TIM barrel.
 
   
 0.755
AEB06433.1
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR000421:IPR006710:IPR022272; KEGG: cmi:CMM_0103 beta-xylosidase glycosyl hydrolase family 43; PFAM: glycoside hydrolase family 43; coagulation factor 5/8 type domain protein; SPTR: Putative beta-xylosidase, glycosyl hydrolase family 43; IMG reference gene:2503575091; PFAM: F5/8 type C domain; Glycosyl hydrolases family 43.
 
     0.751
AEB06655.1
Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR020904:IPR002347; KEGG: ske:Sked_06450 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Putative uncharacterized protein; IMG reference gene:2503575323; PFAM: short chain dehydrogenase.
  
 
 0.686
AEB07634.1
D-sorbitol 6-phosphate 2-dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020904:IPR002198:IPR002347; KEGG: lrh:LGG_02722 sorbitol-6-phosphate 2-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Sorbitol-6-phosphate 2-dehydrogenase; IMG reference gene:2503576354; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.686
AEB07767.1
Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020904:IPR002198:IPR002347; KEGG: snt:SPT_0369 gluconate 5-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Gluconate 5-dehydrogenase; IMG reference gene:2503576489; PFAM: short chain dehydrogenase.
  
 
 0.686
AEB06425.1
Glycoside hydrolase family 2 sugar binding protein; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006103; KEGG: bad:BAD_1534 glycosyl hydrolase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; SPTR: Putative uncharacterized protein; IMG reference gene:2503575083; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain.
 
 
 0.663
AEB06435.1
Major facilitator superfamily MFS_1; COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR011701; KEGG: smf:Smon_1309 Na+/melibiose symporter and related transporter-like protein; PFAM: major facilitator superfamily MFS_1; SPTR: Na+/melibiose symporter and related transporters; IMG reference gene:2503575093; PFAM: Major Facilitator Superfamily.
 
   
 0.622
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.605
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.593
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
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