STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB06445.1Sigma54 specific transcriptional regulator, Fis family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078:IPR010524:IPR002197; KEGG: clj:CLJU_c03810 putative transcriptional regulator; PFAM: Propionate catabolism activator domain-containing protein; helix-turn-helix Fis-type; SPTR: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; IMG reference gene:2503575103; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; Propionate catabolism activator. (594 aa)    
Predicted Functional Partners:
AEB06446.1
Type III effector Hrp-dependent outer protein; COGs: COG3395 conserved hypothetical protein; InterPro IPR010737; KEGG: clj:CLJU_c03820 hypothetical protein; PFAM: type III effector Hrp-dependent outers; SPTR: Uncharacterized protein conserved in bacteria; IMG reference gene:2503575104; PFAM: Protein of unknown function, DUF1537.
 
     0.880
AEB06449.1
4-hydroxythreonine-4-phosphate dehydrogenase; COGs: COG1995 Pyridoxal phosphate biosynthesis protein; InterPro IPR005255; KEGG: ere:EUBREC_1204 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; IMG reference gene:2503575107; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
  
 0.874
AEB06457.1
Hypothetical protein; COGs: COG0455 ATPase involved in chromosome partitioning; KEGG: apv:Apar_1035 chromosome partitioning ATPase-like protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575117; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
  
 
 0.836
AEB07747.1
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR017896:IPR011895:IPR017900:IPR002880:IPR 019752:IPR019456:IPR011766; KEGG: apv:Apar_1328 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; [...]
     
 0.759
AEB06447.1
COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670:IPR018211; KEGG: clj:CLJU_c03830 putative iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Alcohol dehydrogenase, class IV; IMG reference gene:2503575105; PFAM: Iron-containing alcohol dehydrogenase.
 
   
 0.677
AEB06169.1
COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR005467:IPR 004358; KEGG: apv:Apar_1348 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503574811; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
 
 0.673
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
   
 0.581
AEB07345.1
Protein serine phosphatase with GAF(s) sensor(s); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003018:IPR010822:IPR001932; KEGG: apv:Apar_0916 putative PAS/PAC sensor protein; PFAM: Stage II sporulation protein E; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503576054; PFAM: GAF domain; Stage II sporulation protein E (SpoIIE).
 
  
 0.575
AEB07758.1
Type III effector Hrp-dependent outer protein; COGs: COG3395 conserved hypothetical protein; InterPro IPR010737; KEGG: dda:Dd703_2153 protein-N(pi)-phosphohistidine--sugar phosphotransferase; PFAM: type III effector Hrp-dependent outers; SPTR: Protein-N(Pi)-phosphohistidine--sugar phosphotransferase; IMG reference gene:2503576479; PFAM: Protein of unknown function, DUF1537.
 
     0.575
AEB06290.1
Two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: ccu:Ccur_10690 response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Putative uncharacterized protein; IMG reference gene:2503574938; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family.
  
 
 0.549
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
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