STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB06446.1Type III effector Hrp-dependent outer protein; COGs: COG3395 conserved hypothetical protein; InterPro IPR010737; KEGG: clj:CLJU_c03820 hypothetical protein; PFAM: type III effector Hrp-dependent outers; SPTR: Uncharacterized protein conserved in bacteria; IMG reference gene:2503575104; PFAM: Protein of unknown function, DUF1537. (425 aa)    
Predicted Functional Partners:
AEB06449.1
4-hydroxythreonine-4-phosphate dehydrogenase; COGs: COG1995 Pyridoxal phosphate biosynthesis protein; InterPro IPR005255; KEGG: ere:EUBREC_1204 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; IMG reference gene:2503575107; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
     0.968
AEB06445.1
Sigma54 specific transcriptional regulator, Fis family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078:IPR010524:IPR002197; KEGG: clj:CLJU_c03810 putative transcriptional regulator; PFAM: Propionate catabolism activator domain-containing protein; helix-turn-helix Fis-type; SPTR: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; IMG reference gene:2503575103; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; Propionate catabolism activator.
 
     0.880
AEB06447.1
COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670:IPR018211; KEGG: clj:CLJU_c03830 putative iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Alcohol dehydrogenase, class IV; IMG reference gene:2503575105; PFAM: Iron-containing alcohol dehydrogenase.
     0.839
AEB07759.1
2-keto-3-deoxygluconate permease; InterPro IPR004684; KEGG: cro:ROD_50561 putative 2-keto-3-deoxygluconate permease; PFAM: 2-keto-3-deoxygluconate permease; SPTR: Putative 2-keto-3-deoxygluconate permease; IMG reference gene:2503576480; PFAM: 2-keto-3-deoxygluconate permease; TIGRFAM: 2-keto-3-deoxygluconate transporter; TC 2.A.10.1.1.
 
   
 0.788
AEB07758.1
Type III effector Hrp-dependent outer protein; COGs: COG3395 conserved hypothetical protein; InterPro IPR010737; KEGG: dda:Dd703_2153 protein-N(pi)-phosphohistidine--sugar phosphotransferase; PFAM: type III effector Hrp-dependent outers; SPTR: Protein-N(Pi)-phosphohistidine--sugar phosphotransferase; IMG reference gene:2503576479; PFAM: Protein of unknown function, DUF1537.
  
     0.775
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
     0.744
AEB06450.1
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: msu:MS0068 SerA protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: SerA protein; IMG reference gene:2503575108; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase.
  
    0.561
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
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